1QCJ Antiviral Protein date May 05, 1999
title Low Temperature Complex Of Pokeweed Antiviral Protein With Pteoric Acid
authors I.V.Kurinov, D.E.Myers, J.D.Irvin, F.M.Uckun
compound source
Molecule: Pokeweed Antiviral Protein
Chain: A, B
 Organism_scientific: Phytolacca Americana
Organism_common: American Pokeweed
Organism_taxid: 3527
symmetry Space Group: P 1
R_factor 0.230 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.190 48.500 63.920 68.85 81.78 64.62
method X-Ray Diffractionresolution 2.10 Å
ligand APT enzyme
related structures by homologous chain: 1APA, 1QCG
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • toxin activity


    • Primary referenceX-ray crystallographic analysis of the structural basis for the interactions of pokeweed antiviral protein with its active site inhibitor and ribosomal RNA substrate analogs., Kurinov IV, Myers DE, Irvin JD, Uckun FM, Protein Sci 1999 Sep;8(9):1765-72. PMID:10493577
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk]
  • Biological Unit Coordinates (1qcj.pdb1.gz) 57 Kb
  • Biological Unit Coordinates (1qcj.pdb2.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1QCJ
  • CSU: Contacts of Structural Units for 1QCJ
  • Likely Quarternary Molecular Structure file(s) for 1QCJ
  • Retrieve 1QCJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QCJ from S2C, [Save to disk]
    • View 1QCJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QCJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QCJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qcja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qcjb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qcj] [1qcj_B] [1qcj_A]
  • SWISS-PROT database: [P10297]
  • Domain organization of [RIP1_PHYAM] by SWISSPFAM
    • Other resources with information on 1QCJ
  • Community annotation for 1QCJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science