1QD3 Rna date Jul 07, 1999
title Hiv-1 Tar Rnaneomycin B Complex
authors C.Faber, H.Sticht, P.Roesch
compound source
Molecule: Hiv-1 Tar Rna
Chain: A
Fragment: Residues 17-45
Other_details: Neomycin B (Residues Bdg-Cyy-Ryb-Idg) Comple Rna Minor Groove
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Cell_line: Z2cdc-Z34 Isolate
methodSolution NMR
ligand BDG, CYY, IDG, RIB enzyme
Primary referenceStructural rearrangements of HIV-1 Tat-responsive RNA upon binding of neomycin B., Faber C, Sticht H, Schweimer K, Rosch P, J Biol Chem 2000 Jul 7;275(27):20660-6. PMID:10747964
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (307 Kb) [Save to disk]
  • Biological Unit Coordinates (1qd3.pdb1.gz) 18 Kb
  • LPC: Ligand-Protein Contacts for 1QD3
  • CSU: Contacts of Structural Units for 1QD3
  • Retrieve 1QD3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QD3 from S2C, [Save to disk]
    • View 1QD3 in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QD3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QD3, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1e1qd3, region D:82-357 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qd3_A] [1qd3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1QD3
  • Community annotation for 1QD3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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