1QJH Ribosomal Protein date Jun 24, 1999
title Protein Aggregation And Alzheimer'S Disease: Crystallographi Of The Phenomenon. Engineered Version Of The Ribosomal Prot Used As A Stable Scaffold To Study Oligomerization.
authors O.Kristensen, D.E.Otzen, M.Oliveberg
compound source
Molecule: 30s Ribosomal Protein S6
Chain: A
Synonym: Ts9
Engineered: Yes
Mutation: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 274
Gene: Rpsf, Rps6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 42 21 2
R_factor 0.205 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.701 49.701 73.255 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG enzyme
related structures by homologous chain: 1CQN, 1G1X
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDesigned protein tetramer zipped together with a hydrophobic Alzheimer homology: a structural clue to amyloid assembly., Otzen DE, Kristensen O, Oliveberg M, Proc Natl Acad Sci U S A 2000 Aug 29;97(18):9907-12. PMID:10944185
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (21 Kb) [Save to disk]
  • Biological Unit Coordinates (1qjh.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 1QJH
  • CSU: Contacts of Structural Units for 1QJH
  • Likely Quarternary Molecular Structure file(s) for 1QJH
  • Structure Factors (37 Kb)
  • Retrieve 1QJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QJH from S2C, [Save to disk]
  • Re-refined 1qjh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QJH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QJH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qjha_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qjh] [1qjh_A]
  • SWISS-PROT database: [P23370]
  • Domain organization of [RS6_THETH] by SWISSPFAM
    • Other resources with information on 1QJH
  • Community annotation for 1QJH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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