1QJP Outer Membrane date Jun 29, 1999
title High Resolution Structure Of The Outer Membrane Protein A (O Transmembrane Domain
authors A.Pautsch, G.E.Schulz
compound source
Molecule: Outer Membrane Protein A
Chain: A
Fragment: Transmembrane Domain
Engineered: Yes
Mutation: Yes
 Organism_scientific: Escherichia Coli Bl21(De3)
Organism_taxid: 469008
Gene: Ompa
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_plasmid: Pet3b-171
symmetry Space Group: C 1 2 1
R_factor 0.155 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.100 79.700 50.200 90.00 94.30 90.00
method X-Ray Diffractionresolution 1.65 Å
ligand C8E enzyme
related structures by homologous chain: 1BXW
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh-resolution structure of the OmpA membrane domain., Pautsch A, Schulz GE, J Mol Biol 2000 Apr 28;298(2):273-82. PMID:10764596
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (1qjp.pdb1.gz) 53 Kb
  • LPC: Ligand-Protein Contacts for 1QJP
  • CSU: Contacts of Structural Units for 1QJP
  • Likely Quarternary Molecular Structure file(s) for 1QJP
  • Structure Factors (197 Kb)
  • Retrieve 1QJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QJP from S2C, [Save to disk]
  • Re-refined 1qjp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QJP
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QJP, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qjpa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qjp_A] [1qjp]
  • SWISS-PROT database: [P0A910]
  • Belongs to the ompa-ompf porin (oop) family according to TCDB.
  • Domain organization of [OMPA_ECOLI] by SWISSPFAM
    • Other resources with information on 1QJP
  • Community annotation for 1QJP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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