1QJX Virus date Jul 06, 1999
title Human Rhinovirus 16 Coat Protein In Complex With Antiviral C Win68934
authors A.T.Hadfield, G.D.Diana, M.G.Rossmann
compound source
Molecule: Protein Vp1
Chain: 1
Fragment: Residues 569-853
Synonym: Virion Protein 1, P1d, Human Rhinovirus 16 Coat Pr
Organism_scientific: Human Rhinovirus 16
Organism_common: Hrv-16
Organism_taxid: 31708
Strain: Serotype 16

Molecule: Protein Vp2
Chain: 2
Fragment: Residues 70-330
Synonym: Virion Protein 2, P1b, Human Rhinovirus 16 Coat Pr

Organism_scientific: Human Rhinovirus 16
Organism_common: Hrv-16
Organism_taxid: 31708
Strain: Serotype 16

Molecule: Protein Vp3
Chain: 3
Fragment: Residues 331-568
Synonym: Virion Protein 3, P1c, Human Rhinovirus 16 Coat Pr

Organism_scientific: Human Rhinovirus 16
Organism_common: Hrv-16
Organism_taxid: 31708
Strain: Serotype 16

Molecule: Protein Vp4
Chain: 4
Fragment: Residues 2-69
Synonym: Virion Protein 4, P1a, Human Rhinovirus 16 Coat Pr
Other_details: Residue 1 Of Chain 4 Myristoylated (Residue Myristate) Antiviral Compound Vp61209 (Formerly Win 61209) A Pocket In Viral Protein With A Possible Zinc, Located On Axes

Organism_scientific: Human Rhinovirus 16
Organism_common: Hrv-16
Organism_taxid: 31708
Strain: Serotype 16
symmetry Space Group: P 2 21 21
R_factor 0.231 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
362.600 347.100 334.900 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand MYR, W02, ZN enzyme
related structures by homologous chain: 1C8M, 1QJY
Gene
Ontology
ChainFunctionProcessComponent
1, 3, 2


4


Primary referenceAnalysis of three structurally related antiviral compounds in complex with human rhinovirus 16., Hadfield AT, Diana GD, Rossmann MG, Proc Natl Acad Sci U S A 1999 Dec 21;96(26):14730-5. PMID:10611281
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (144 Kb) [Save to disk]
  • Biological Unit Coordinates (1qjx.pdb1.gz) 7770 Kb
  • LPC: Ligand-Protein Contacts for 1QJX
  • CSU: Contacts of Structural Units for 1QJX
  • Likely Quarternary Molecular Structure file(s) for 1QJX
  • Structure Factors (4857 Kb)
  • Retrieve 1QJX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QJX from S2C, [Save to disk]
  • Re-refined 1qjx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QJX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QJX
  • VIPERdb: visual, structural and computational analysis of 1QJX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QJX, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qjx1_, region 1 [Jmol] [rasmolscript] [script source]
        - Domain d1qjx3_, region 3 [Jmol] [rasmolscript] [script source]
        - Domain d1qjx.1, region 4:,2 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qjx_2] [1qjx_3] [1qjx] [1qjx_4] [1qjx_1]
  • SWISS-PROT database: [Q82122]
  • Domain organization of [POLG_HRV16] by SWISSPFAM
  • Other resources with information on 1QJX
  • Community annotation for 1QJX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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