1QLC Peptide Recognition date Aug 25, 1999
title Solution Structure Of The Second Pdz Domain Of Postsynaptic Density-95
authors H.Tochio, F.Hung, M.Li, M.Zhang
compound source
Molecule: Postsynaptic Density Protein 95
Chain: A
Fragment: The Second Pdz Domain
Synonym: Psd-95
Engineered: Yes
 Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
Primary referenceSolution structure and backbone dynamics of the second PDZ domain of postsynaptic density-95., Tochio H, Hung F, Li M, Bredt DS, Zhang M, J Mol Biol 2000 Jan 14;295(2):225-37. PMID:10623522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (462 Kb) [Save to disk]
  • CSU: Contacts of Structural Units for 1QLC
  • Original NMR restraints for 1QLC from PDB
  • Retrieve 1QLC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QLC from S2C, [Save to disk]
    • View 1QLC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QLC
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QLC, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qlca_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qlc] [1qlc_A]
  • SWISS-PROT database: [P31016]
  • Domain organization of [DLG4_RAT] by SWISSPFAM
  • Domain found in 1QLC: [PDZ ] by SMART
    • Other resources with information on 1QLC
  • Community annotation for 1QLC at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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