1QLO Membrane Proteins date Sep 09, 1999
title Structure Of The Active Domain Of The Herpes Simplex Virus P Icp47 In Watersodium Dodecyl Sulfate Solution Determined B Magnetic Resonance Spectroscopy
authors R.Pfaender, L.Neumann, M.Zweckstetter, C.Seger, T.A.Holak, R.Tamp
compound source
Molecule: Herpes Simplex Virus Protein Icp47
Chain: A
Fragment: Active Domain
Synonym: Immediate-Early Protein Ie12, Immediate-Early-5, V
Engineered: Yes
 Organism_scientific: Herpes Simplex Virus
Organism_taxid: 10299
Strain: Type 1 - Strain 17
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
methodSolution NMR
note 1QLO is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the active domain of the herpes simplex virus protein ICP47 in water/sodium dodecyl sulfate solution determined by nuclear magnetic resonance spectroscopy., Pfander R, Neumann L, Zweckstetter M, Seger C, Holak TA, Tampe R, Biochemistry 1999 Oct 12;38(41):13692-8. PMID:10521276
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (179 Kb) [Save to disk]
  • Biological Unit Coordinates (1qlo.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1QLO
  • Original NMR restraints for 1QLO from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1QLO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QLO from S2C, [Save to disk]
    • View 1QLO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QLO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QLO, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qloa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qlo] [1qlo_A]
  • SWISS-PROT database: [P03170]
  • Belongs to the immune evasion protein, icp47 (icp47) family according to TCDB.
  • Domain organization of [ICP47_HHV11] by SWISSPFAM
    • Other resources with information on 1QLO
  • Community annotation for 1QLO at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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