1QMU Carboxypeptidase date Oct 06, 1999
title Duck Carboxypeptidase D Domain II
authors F.X.Gomis-Rueth, M.Coll, F.X.Aviles, J.Vendrell, L.D.Fricker
compound source
Molecule: Carboxypeptidase Gp180 Residues 503-882
Chain: A
Fragment: Yes
Engineered: Yes
Organism_scientific: Lophonetta Specularioides
Organism_common: Crested Duck
Organism_taxid: 8836
Organ: Liver
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: Km71
Other_details: Obtained After Cloning Into And Overexpressi Pichia Pastoris System.
symmetry Space Group: P 21 3
R_factor 0.198 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
135.540 135.540 135.540 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand MAN, NAG, SO4, ZN enzyme
related structures by homologous chain: 1H8L
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of avian carboxypeptidase D domain II: a prototype for the regulatory metallocarboxypeptidase subfamily., Gomis-Ruth FX, Companys V, Qian Y, Fricker LD, Vendrell J, Aviles FX, Coll M, EMBO J 1999 Nov 1;18(21):5817-26. PMID:10545093
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1qmu.pdb1.gz) 195 Kb
  • LPC: Ligand-Protein Contacts for 1QMU
  • CSU: Contacts of Structural Units for 1QMU
  • Likely Quarternary Molecular Structure file(s) for 1QMU
  • Retrieve 1QMU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QMU from S2C, [Save to disk]
  • View 1QMU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QMU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QMU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qmua1, region A:305-383 [Jmol] [rasmolscript] [script source]
        - Domain d1qmua2, region A:4-304 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qmu] [1qmu_A]
  • SWISS-PROT database: [P83852]
  • Domain organization of [CBPD_LOPSP] by SWISSPFAM
  • Domain found in 1QMU: [Zn_pept ] by SMART
  • Other resources with information on 1QMU
  • Community annotation for 1QMU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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