1QOL Hydrolase date Nov 13, 1999
title Structure Of The Fmdv Leader Protease
authors A.Guarne, J.Tormo, R.Kirchweger, D.Pfistermueller, T.Skern, I.Fit
compound source
Molecule: Protease (Nonstructural Protein P20a)
Chain: A, B, C, D, E, F, G, H
Synonym: Leader Protease
Engineered: Yes
Mutation: Yes
 Organism_scientific: Foot-And-Mouth Disease Virus
Organism_taxid: 73482
Strain: O1
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.258 R_Free 0.314
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.430 101.560 276.970 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand CL, EDO enzyme
related structures by homologous chain: 1QMY
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructure of the foot-and-mouth disease virus leader protease: a papain-like fold adapted for self-processing and eIF4G recognition., Guarne A, Tormo J, Kirchweger R, Pfistermueller D, Fita I, Skern T, EMBO J 1998 Dec 15;17(24):7469-79. PMID:9857201
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (226 Kb) [Save to disk]
  • Biological Unit Coordinates (1qol.pdb1.gz) 58 Kb
  • Biological Unit Coordinates (1qol.pdb2.gz) 58 Kb
  • Biological Unit Coordinates (1qol.pdb3.gz) 58 Kb
  • Biological Unit Coordinates (1qol.pdb4.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 1QOL
  • CSU: Contacts of Structural Units for 1QOL
  • Likely Quarternary Molecular Structure file(s) for 1QOL
  • Structure Factors (284 Kb)
  • Retrieve 1QOL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QOL from S2C, [Save to disk]
  • Re-refined 1qol structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QOL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QOL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QOL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qola_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qolb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qolc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1qold_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1qole_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1qolf_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1qolg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1qolh_, region H [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qol_H] [1qol_A] [1qol_E] [1qol_C] [1qol] [1qol_D] [1qol_B] [1qol_F] [1qol_G]
  • SWISS-PROT database: [P03305]
  • Domain organization of [POLG_FMDVO] by SWISSPFAM
    • Other resources with information on 1QOL
  • Community annotation for 1QOL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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