1QPL Isomerase date May 25, 1999
title Fk506 Binding Protein (12 Kda, Human) Complex With L-707,587
authors J.W.Becker, J.Rotonda
compound source
Molecule: Protein (Fk506-Binding Protein)
Chain: A, C
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4
R_factor 0.223 R_Free 0.342
crystal
cell
length a length b length c angle alpha angle beta angle gamma
119.740 119.740 57.210 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand 587 enzyme
related structures by homologous chain: 1F40, 4FAP
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary reference32-Indolyl ether derivatives of ascomycin: three-dimensional structures of complexes with FK506-binding protein., Becker JW, Rotonda J, Cryan JG, Martin M, Parsons WH, Sinclair PJ, Wiederrecht G, Wong F, J Med Chem 1999 Jul 29;42(15):2798-804. PMID:10425089
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1qpl.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1QPL
  • CSU: Contacts of Structural Units for 1QPL
  • Likely Quarternary Molecular Structure file(s) for 1QPL
  • Structure Factors (47 Kb)
  • Retrieve 1QPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QPL from S2C, [Save to disk]
  • Re-refined 1qpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QPL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QPL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qpla_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qplc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qpl_A] [1qpl_C] [1qpl]
  • SWISS-PROT database: [P62942]
  • Belongs to the immunophilin-like prolyl:peptidyl isomerase regulator (i-ppi) family according to TCDB.
  • Domain organization of [FKB1A_HUMAN] by SWISSPFAM
  • Other resources with information on 1QPL
  • Community annotation for 1QPL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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