1QPY Peptide Nucleic Acid date May 14, 1999
title Crystal Structure Of Backbone Modified Pna Hexamer
authors G.Haima, H.Rasmussen, G.Schmidt, D.K.Jensen, J.S.Kastrup, P.W.Sta B.Norden, O.Buchardt, P.E.Nielsen
compound source
Molecule: Peptide Nucleic Acid 5'-(Cp1gpntp1apncp1gpn
Chain: A, B, C, D, E, F, G, H
Engineered: Yes
 Synthetic: Yes
symmetry Space Group: P 1 21 1
R_factor 0.214 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.950 31.140 50.390 90.00 110.85 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand APN, CP1, GPN, TP1 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (1qpy.pdb1.gz) 8 Kb
  • Biological Unit Coordinates (1qpy.pdb2.gz) 8 Kb
  • Biological Unit Coordinates (1qpy.pdb3.gz) 8 Kb
  • Biological Unit Coordinates (1qpy.pdb4.gz) 8 Kb
  • LPC: Ligand-Protein Contacts for 1QPY
  • CSU: Contacts of Structural Units for 1QPY
  • Likely Quarternary Molecular Structure file(s) for 1QPY
  • Structure Factors (63 Kb)
  • Retrieve 1QPY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QPY from S2C, [Save to disk]
  • Re-refined 1qpy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1QPY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QPY
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QPY, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qpy_A] [1qpy_F] [1qpy_G] [1qpy_H] [1qpy] [1qpy_C] [1qpy_D] [1qpy_E] [1qpy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1QPY
  • Community annotation for 1QPY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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