1QRJ Viral Protein date Jun 14, 1999
title Solution Structure Of Htlv-I Capsid Protein
authors S.Khorasanizadeh, R.Campos-Olivas, C.A.Clark, M.F.Summers
compound source
Molecule: Htlv-I Capsid Protein
Chain: A
Engineered: Yes
 Organism_scientific: Human T-Cell Lymphotrophic Virus Type
Organism_taxid: 11926
Strain: Atk
Gene: Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_cell_line: Hms174(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
Other_details: T7-Rna Polymerase-Based Expression System
methodSolution NMR
related structures by homologous chain: 1G03
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSequence-specific 1H, 13C and 15N chemical shift assignment and secondary structure of the HTLV-I capsid protein., Khorasanizadeh S, Campos-Olivas R, Clark CA, Summers MF, J Biomol NMR 1999 Jun;14(2):199-200. PMID:10427751
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1028 Kb) [Save to disk]
  • Biological Unit Coordinates (1qrj.pdb1.gz) 52 Kb
  • CSU: Contacts of Structural Units for 1QRJ
  • Original NMR restraints for 1QRJ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1QRJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QRJ from S2C, [Save to disk]
    • View 1QRJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1QRJ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QRJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qrj.1, region A:,B:16-130 [Jmol] [rasmolscript] [script source]
        - Domain d1qrjb1, region B:131-214 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qrj_B] [1qrj_A] [1qrj]
  • SWISS-PROT database: [P03345] [P03362]
  • Domain organization of [GAG_HTL1A] [POL_HTL1A] by SWISSPFAM
    • Other resources with information on 1QRJ
  • Community annotation for 1QRJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science