1QU9 Structural Genomics date Jul 07, 1999
title 1.2 A Crystal Structure Of Yjgf Gene Product From E. Coli
authors K.Volz
compound source
Molecule: Yjgf Protein
Chain: A, B, C
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 2 2 2
R_factor 0.164 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.220 72.220 72.220 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.20 Å
ligand CSP enzyme
related structures by homologous chain: 1J7H
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceA test case for structure-based functional assignment: the 1.2 A crystal structure of the yjgF gene product from Escherichia coli., Volz K, Protein Sci 1999 Nov;8(11):2428-37. PMID:10595546
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (1qu9.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 1QU9
  • CSU: Contacts of Structural Units for 1QU9
  • Likely Quarternary Molecular Structure file(s) for 1QU9
  • Structure Factors (1043 Kb)
  • Retrieve 1QU9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QU9 from S2C, [Save to disk]
  • Re-refined 1qu9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QU9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QU9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1QU9 1QU9A 1QU9B 1QU9C from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QU9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qu9a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1qu9b_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1qu9c_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qu9_C] [1qu9] [1qu9_A] [1qu9_B]
  • SWISS-PROT database: [P0AF93]
  • Domain organization of [YJGF_ECOLI] by SWISSPFAM
  • Other resources with information on 1QU9
  • Community annotation for 1QU9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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