1QV6 Oxidoreductase date Aug 26, 2003
title Horse Liver Alcohol Dehydrogenase His51glnlys228arg Mutant With Nad+ And 2,4-Difluorobenzyl Alcohol
authors L.A.Lebrun, D.H.Park, S.Ramaswamy, B.V.Plapp
compound source
Molecule: Alcohol Dehydrogenase E Chain
Chain: A, B
Fragment: Recombinant Without The Wild-Type N-Acetyl Group
Ec: 1.1.1.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Equus Caballus
Organism_common: Horse
Organism_taxid: 9796
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Xl1-Blue
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbpp
symmetry Space Group: P 1
R_factor 0.157 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
44.255 51.115 92.722 91.61 103.05 109.90
method X-Ray Diffractionresolution 1.80 Å
ligand 24B, MPD, NAD, ZN enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
related structures by homologous chain: 2OHX, 3BTO
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceParticipation of histidine-51 in catalysis by horse liver alcohol dehydrogenase., LeBrun LA, Park DH, Ramaswamy S, Plapp BV, Biochemistry 2004 Mar 23;43(11):3014-26. PMID:15023053
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk]
  • Biological Unit Coordinates (1qv6.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 1QV6
  • CSU: Contacts of Structural Units for 1QV6
  • Likely Quarternary Molecular Structure file(s) for 1QV6
  • Structure Factors (457 Kb)
  • Retrieve 1QV6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1QV6 from S2C, [Save to disk]
  • Re-refined 1qv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1QV6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1QV6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1QV6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1qv6a1, region A:1-163,A:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1qv6a2, region A:164-339 [Jmol] [rasmolscript] [script source]
        - Domain d1qv6b1, region B:1-163,B:340-374 [Jmol] [rasmolscript] [script source]
        - Domain d1qv6b2, region B:164-339 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1qv6] [1qv6_A] [1qv6_B]
  • SWISS-PROT database: [P00327]
  • Domain organization of [ADH1E_HORSE] by SWISSPFAM
  • Other resources with information on 1QV6
  • Community annotation for 1QV6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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