1QVW	Structural Genomics, Unknown Function	date	Aug 29, 2003
title	Crystal Structure Of The S. Cerevisiae Ydr533c Protein
authors	M.Graille, N.Leulliot, S.Quevillon-Cheruel, H.Van Tilbeurgh
compound		source
Molecule: Ydr533c Protein Chain: A, B Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ydr533c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plys Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet9
symmetry	Space Group: P 21 21 2	R_factor 0.185 R_Free 0.221
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.531 166.196 48.295 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	CME, GOL	enzyme
related structures	by homologous chain: 1QVV, 1QVZ
Gene Ontology	Chain Function Process Component A, B glyoxalase III activity
Primary reference	Crystal structure of the YDR533c S. cerevisiae protein, a class II member of the Hsp31 family., Graille M, Quevillon-Cheruel S, Leulliot N, Zhou CZ, de la Sierra Gallay IL, Jacquamet L, Ferrer JL, Liger D, Poupon A, Janin J, van Tilbeurgh H, Structure (Camb) 2004 May;12(5):839-47. PMID:15130476

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk] Biological Unit Coordinates (1qvw.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 1QVW CSU: Contacts of Structural Units for 1QVW Likely Quarternary Molecular Structure file(s) for 1QVW Structure Factors (531 Kb) Retrieve 1QVW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QVW from S2C, [Save to disk] Re-refined 1qvw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1QVW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QVW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QVW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qvwa_, region A [Jmol] [rasmolscript] [script source]     - Domain d1qvwb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qvw] [1qvw_B] [1qvw_A] SWISS-PROT database: [Q04432] Domain organization of [HSP31_YEAST] by SWISSPFAM

Other resources with information on 1QVW

Community annotation for 1QVW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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