1QVZ	Structural Genomics, Unknown Function	date	Aug 29, 2003
title	Crystal Structure Of The S. Cerevisiae Ydr533c Protein
authors	M.Graille, N.Leulliot, S.Quevillon-Cheruel, H.Van Tilbeurgh
compound		source
Molecule: Ydr533c Protein Chain: A, B Engineered: Yes Mutation: Yes		Organism_scientific: Saccharomyces Cerevisiae Organism_common: Baker'S Yeast Organism_taxid: 4932 Gene: Ydr533c Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Plys Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet9
symmetry	Space Group: P 21 21 2	R_factor 0.191 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 61.404 165.927 47.807 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.85 Å
ligand	CSO, MSE	enzyme
note	1QVZ is a representative structure
related structures	by homologous chain: 1QVW, 1RW7
Gene Ontology	Chain Function Process Component A, B glyoxalase III activity
Primary reference	Crystal structure of the YDR533c S. cerevisiae protein, a class II member of the Hsp31 family., Graille M, Quevillon-Cheruel S, Leulliot N, Zhou CZ, de la Sierra Gallay IL, Jacquamet L, Ferrer JL, Liger D, Poupon A, Janin J, van Tilbeurgh H, Structure (Camb) 2004 May;12(5):839-47. PMID:15130476

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (1qvz.pdb1.gz) 80 Kb LPC: Ligand-Protein Contacts for 1QVZ CSU: Contacts of Structural Units for 1QVZ Likely Quarternary Molecular Structure file(s) for 1QVZ Structure Factors (942 Kb) Retrieve 1QVZ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1QVZ from S2C, [Save to disk] Re-refined 1qvz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1QVZ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1QVZ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1QVZ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1qvza_, region A [Jmol] [rasmolscript] [script source]     - Domain d1qvzb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1qvz_A] [1qvz] [1qvz_B] SWISS-PROT database: [Q04432] Domain organization of [HSP31_YEAST] by SWISSPFAM

Other resources with information on 1QVZ

Community annotation for 1QVZ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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