1R0D Structural Protein date Sep 19, 2003
title Hip1r Thatch Domain Core
authors T.J.Brett, D.H.Fremont, Midwest Center For Structural Genomics (Mcsg)
compound source
Molecule: Huntingtin Interacting Protein 12
Chain: A, B, D, E, F, G, H, I
Fragment: C-Terminal Thatch Domain, Residues 771-971
Synonym: Hip1-Related; Hip 12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hip1r, Hip12, Kiaa0655
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 De3
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-4t1
symmetry Space Group: C 1 2 1
R_factor 0.224 R_Free 0.269
crystal
cell
length a length b length c angle alpha angle beta angle gamma
148.200 165.900 109.800 90.00 132.40 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, F, A, D, I, G, E, B


Primary referenceStructural definition of the F-actin-binding THATCH domain from HIP1R., Brett TJ, Legendre-Guillemin V, McPherson PS, Fremont DH, Nat Struct Mol Biol. 2006 Feb;13(2):121-30. Epub 2006 Jan 15. PMID:16415883
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (1r0d.pdb1.gz) 35 Kb
  • Biological Unit Coordinates (1r0d.pdb2.gz) 35 Kb
  • Biological Unit Coordinates (1r0d.pdb3.gz) 35 Kb
  • Biological Unit Coordinates (1r0d.pdb4.gz) 35 Kb
  • Biological Unit Coordinates (1r0d.pdb5.gz) 34 Kb
  • Biological Unit Coordinates (1r0d.pdb6.gz) 35 Kb
  • Biological Unit Coordinates (1r0d.pdb7.gz) 34 Kb
  • Biological Unit Coordinates (1r0d.pdb8.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 1R0D
  • CSU: Contacts of Structural Units for 1R0D
  • Likely Quarternary Molecular Structure file(s) for 1R0D
  • Structure Factors (2263 Kb)
  • Retrieve 1R0D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R0D from S2C, [Save to disk]
  • Re-refined 1r0d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R0D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R0D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R0D, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r0da_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1r0db_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1r0dd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1r0de_, region E [Jmol] [rasmolscript] [script source]
        - Domain d1r0df_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1r0dg_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1r0dh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1r0di_, region I [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r0d_G] [1r0d_D] [1r0d] [1r0d_F] [1r0d_A] [1r0d_I] [1r0d_H] [1r0d_E] [1r0d_B]
  • SWISS-PROT database: [O75146]
  • Domain organization of [HIP1R_HUMAN] by SWISSPFAM
  • Domain found in 1R0D: [ILWEQ ] by SMART
  • Other resources with information on 1R0D
  • Community annotation for 1R0D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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