1R29 Transcription date Sep 26, 2003
title Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb Domain Angstrom
authors K.F.Ahmad, A.Melnick, S.A.Lax, D.Bouchard, J.Liu, C.L.Kiang, S.May J.D.Licht, G.G.Prive
compound source
Molecule: B-Cell Lymphoma 6 Protein
Chain: A
Fragment: Btb Domain (Residues 5-129)
Synonym: Bcl-6, Zinc Finger Protein 51, Laz-3 Protein, Poz Btbpoz Domain;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bcl6
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-32(A)
symmetry Space Group: C 1 2 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
30.606 71.849 55.414 90.00 105.91 90.00
method X-Ray Diffractionresolution 1.30 Å
note 1R29 is a representative structure
related structures by homologous chain: 1R28
Primary referenceMechanism of SMRT corepressor recruitment by the BCL6 BTB domain., Ahmad KF, Melnick A, Lax S, Bouchard D, Liu J, Kiang CL, Mayer S, Takahashi S, Licht JD, Prive GG, Mol Cell. 2003 Dec;12(6):1551-64. PMID:14690607
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (52 Kb) [Save to disk]
  • Biological Unit Coordinates (1r29.pdb1.gz) 95 Kb
  • CSU: Contacts of Structural Units for 1R29
  • Likely Quarternary Molecular Structure file(s) for 1R29
  • Structure Factors (395 Kb)
  • Retrieve 1R29 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R29 from S2C, [Save to disk]
  • Re-refined 1r29 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1R29 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R29
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1R29 from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R29, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r29a_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r29_A] [1r29]
  • SWISS-PROT database: [P41182]
  • Domain organization of [BCL6_HUMAN] by SWISSPFAM
  • Domain found in 1R29: [BTB ] by SMART
    • Other resources with information on 1R29
  • Community annotation for 1R29 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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