1R4X Protein Transport date Oct 09, 2003
title Crystal Structure Analys Of The Gamma-Copi Appendage Domain
authors P.J.Watson, G.Frigerio, B.M.Collins, R.Duden, D.J.Owen
compound source
Molecule: Coatomer Gamma Subunit
Chain: A
Synonym: Gamma1-Cop; Coatomer Protein Complex, Subunit Gamma 1; Coat Protein Gamma-Cop; Gamma-Coat Protein; Gamma- Cop; Coat Protein Gamma-Cop;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
symmetry Space Group: P 21 21 21
R_factor 0.173 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.800 74.100 99.200 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand CAS, MG enzyme
related structures by homologous chain: 1PZD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceGamma-COP appendage domain - structure and function., Watson PJ, Frigerio G, Collins BM, Duden R, Owen DJ, Traffic 2004 Feb;5(2):79-88. PMID:14690497
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (1r4x.pdb1.gz) 49 Kb
  • LPC: Ligand-Protein Contacts for 1R4X
  • CSU: Contacts of Structural Units for 1R4X
  • Likely Quarternary Molecular Structure file(s) for 1R4X
  • Structure Factors (205 Kb)
  • Retrieve 1R4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R4X from S2C, [Save to disk]
  • Re-refined 1r4x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1R4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R4X
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R4X, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r4xa1, region A:600-762 [Jmol] [rasmolscript] [script source]
        - Domain d1r4xa2, region A:763-873 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r4x_A] [1r4x]
  • SWISS-PROT database: [Q9Y678]
  • Domain organization of [COPG_HUMAN] by SWISSPFAM
    • Other resources with information on 1R4X
  • Community annotation for 1R4X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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