1R5G Hydrolase date Oct 10, 2003
title Crystal Structure Of Metap2 Complexed With A311263
authors G.S.Sheppard, J.Wang, M.Kawai, N.Y.Bamaung, R.A.Craig, S.A.Erickson, L.Lynch, J.Patel, F.Yang, X.B.Searle, P.Lou, C.Park K.H.Kim, J.Henkin, R.Lesniewski
compound source
Molecule: Methionine Aminopeptidase 2
Chain: A
Fragment: Residues 110-478
Synonym: Metap 2, Peptidase M 2, Initiation Factor 2 Associated 67 Kda Glycoprotein, P67, P67eif2;
Ec: 3.4.11.18
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.201 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.009 98.612 101.093 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand AO1, MN BindingDB enzyme Hydrolase E.C.3.4.11.18 BRENDA
related structures by homologous chain: 1KQ0, 1R5H
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference3-Amino-2-hydroxyamides and related compounds as inhibitors of methionine aminopeptidase-2., Sheppard GS, Wang J, Kawai M, BaMaung NY, Craig RA, Erickson SA, Lynch L, Patel J, Yang F, Searle XB, Lou P, Park C, Kim KH, Henkin J, Lesniewski R, Bioorg Med Chem Lett 2004 Feb 23;14(4):865-8. PMID:15012983
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (72 Kb) [Save to disk]
  • Biological Unit Coordinates (1r5g.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1R5G
  • CSU: Contacts of Structural Units for 1R5G
  • Likely Quarternary Molecular Structure file(s) for 1R5G
  • Structure Factors (264 Kb)
  • Retrieve 1R5G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R5G from S2C, [Save to disk]
  • Re-refined 1r5g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1R5G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1R5G
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R5G, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r5ga2, region A:110-374,A:449-478 [Jmol] [rasmolscript] [script source]
        - Domain d1r5ga1, region A:375-448 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r5g] [1r5g_A]
  • SWISS-PROT database: [P50579]
  • Domain organization of [AMPM2_HUMAN] by SWISSPFAM
    • Other resources with information on 1R5G
  • Community annotation for 1R5G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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