1R5O Translation date Oct 11, 2003
title Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
authors C.Kong, H.Song
compound source
Molecule: Eukaryotic Peptide Chain Release Factor Gtp-Bindi Subunit;
Chain: A
Fragment: Residues 196-662
Synonym: Erf2, Translation Release Factor 3, Erf3, Erf-3
Engineered: Yes
Organism_scientific: Schizosaccharomyces Pombe
Organism_common: Fission Yeast
Organism_taxid: 4896
Gene: Sup35
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-Star
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-6p-1
symmetry Space Group: P 43 21 2
R_factor 0.266 R_Free 0.320
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.524 82.524 168.076 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand GNP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure and functional analysis of the eukaryotic class II release factor eRF3 from S. pombe., Kong C, Ito K, Walsh MA, Wada M, Liu Y, Kumar S, Barford D, Nakamura Y, Song H, Mol Cell 2004 Apr 23;14(2):233-45. PMID:15099522
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (73 Kb) [Save to disk]
  • Biological Unit Coordinates (1r5o.pdb1.gz) 67 Kb
  • LPC: Ligand-Protein Contacts for 1R5O
  • CSU: Contacts of Structural Units for 1R5O
  • Likely Quarternary Molecular Structure file(s) for 1R5O
  • Structure Factors (89 Kb)
  • Retrieve 1R5O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R5O from S2C, [Save to disk]
  • Re-refined 1r5o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1R5O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R5O
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R5O, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r5oa3, region A:215-459 [Jmol] [rasmolscript] [script source]
        - Domain d1r5oa1, region A:460-554 [Jmol] [rasmolscript] [script source]
        - Domain d1r5oa2, region A:555-622 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r5o] [1r5o_A]
  • SWISS-PROT database: [O74718]
  • Domain organization of [ERF3_SCHPO] by SWISSPFAM
  • Other resources with information on 1R5O
  • Community annotation for 1R5O at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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