1R79 Transferase date Oct 21, 2003
title Solution Structure Of The C1 Domain Of The Human Diacylglyce Delta
authors K.Miyamoto, T.Tomizawa, S.Koshiba, M.Inoue, T.Kigawa, S.Yokoyama, Structural Genomicsproteomics Initiative (Rsgi)
compound source
Molecule: Diacylglycerol Kinase, Delta
Chain: A
Fragment: C1 Domain
Synonym: Diglyceride Kinase, Dgk-Delta, Dag Kinase Delta, 1 Diacylglycerol Kinase, Diacylglycerol Kinase Delta(Kiaa0145
Ec: 2.7.1.107
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Kazusa Cdna Ha00914
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P030128-49
Other_details: Cell-Free Protein Synthesis
methodSolution NMR
ligand ZN enzyme Transferase E.C.2.7.1.107 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (408 Kb) [Save to disk]
  • Biological Unit Coordinates (1r79.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1R79
  • CSU: Contacts of Structural Units for 1R79
  • Retrieve 1R79 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R79 from S2C, [Save to disk]
  • View 1R79 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R79
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R79, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r79a_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r79] [1r79_A]
  • SWISS-PROT database: [Q16760]
  • Domain organization of [DGKD_HUMAN] by SWISSPFAM
  • Domain found in 1R79: [C1 ] by SMART
  • Other resources with information on 1R79
  • Community annotation for 1R79 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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