1R7F Membrane Protein date Oct 21, 2003
title Nmr Structure Of The Membrane Anchor Domain (1-31) Of The Nonstructural Protein 5a (Ns5a) Of Hepatitis C Virus (Ensem Structures. Sample In 100mm Sds)
authors F.Penin, V.Brass, N.Appel, S.Ramboarina, R.Montserret, D.Ficheux, R.Bartenschlager, D.Moradpour
compound source
Molecule: Genome Polyprotein
Chain: A
Fragment: Nonstructural Protein Ns5a (P56)(Residues 1973-20 Swiss-Prot Sequence P27958);
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Is Naturally Found In Hepatitis C Virus.
methodSolution NMR
related structures by homologous chain: 1R7E, 1R7G
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure and function of the membrane anchor domain of hepatitis C virus nonstructural protein 5A., Penin F, Brass V, Appel N, Ramboarina S, Montserret R, Ficheux D, Blum HE, Bartenschlager R, Moradpour D, J Biol Chem 2004 Jul 7;. PMID:15247283
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (380 Kb) [Save to disk]
  • Biological Unit Coordinates (1r7f.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1R7F
  • Original NMR restraints for 1R7F from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1R7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1R7F from S2C, [Save to disk]
  • View 1R7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1R7F
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1R7F, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1r7fa_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1r7f_A] [1r7f]
  • SWISS-PROT database: [P27958]
  • Domain organization of [POLG_HCVH] by SWISSPFAM
  • Other resources with information on 1R7F
  • Community annotation for 1R7F at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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