1RCD Iron Storage date Aug 04, 1995
title Bullfrog Red Cell L Ferritin Tartratemgph 5.5
authors J.Trikha, E.C.Theil, N.M.Allewell
compound source
Molecule: L Ferritin
Chain: A
Engineered: Yes
Organism_scientific: Rana Catesbeiana
Organism_common: Bullfrog
Organism_taxid: 8400
Cell: Red Cell
Gene: Cdna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Pet
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet 3a
Expression_system_gene: Cdna
symmetry Space Group: F 4 3 2
R_factor 0.186 R_Free 0.268
crystal
cell
length a length b length c angle alpha angle beta angle gamma
182.355 182.355 182.355 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BET enzyme
related structures by homologous chain: 1RCI, 2FHA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHigh resolution crystal structures of amphibian red-cell L ferritin: potential roles for structural plasticity and solvation in function., Trikha J, Theil EC, Allewell NM, J Mol Biol 1995 May 19;248(5):949-67. PMID:7760335
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (35 Kb) [Save to disk]
  • Biological Unit Coordinates (1rcd.pdb1.gz) 667 Kb
  • LPC: Ligand-Protein Contacts for 1RCD
  • CSU: Contacts of Structural Units for 1RCD
  • Likely Quarternary Molecular Structure file(s) for 1RCD
  • Retrieve 1RCD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RCD from S2C, [Save to disk]
  • View 1RCD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RCD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RCD, from MSDmotif at EBI
  • Genome occurence of 1RCD's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rcd__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rcd] [1rcd_A]
  • SWISS-PROT database: [P07797]
  • Domain organization of [FRI3_RANCA] by SWISSPFAM
  • Other resources with information on 1RCD
  • Community annotation for 1RCD at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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