1RER Viral Protein date Nov 07, 2003
title Crystal Structure Of The Homotrimer Of Fusion Glycoprotein E Semliki Forest Virus.
authors D.L.Gibbons, M.C.Vaney, A.Roussel, A.Vigouroux, B.Reilly, M.Kieli F.A.Rey
compound source
Molecule: Structural Polyprotein
Chain: A, B, C
Fragment: Spike Glycoprotein E1
Other_details: Contains: Coat Protein C (Ec 3.4.21.-) (Caps C); Spike Glycoprotein E3; Spike Glycoprotein E2; Spike Gly E1
 Organism_scientific: Semliki Forest Virus
Organism_taxid: 11033
symmetry Space Group: P 31 2 1
R_factor 0.265 R_Free 0.285
crystal
cell
length a length b length c angle alpha angle beta angle gamma
198.197 198.197 116.250 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.20 Å
ligand BMA, BR, FUC, FUL, HO, MAN, NAG, PO4 enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceConformational change and protein-protein interactions of the fusion protein of Semliki Forest virus., Gibbons DL, Vaney MC, Roussel A, Vigouroux A, Reilly B, Lepault J, Kielian M, Rey FA, Nature 2004 Jan 22;427(6972):320-5. PMID:14737160
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (1rer.pdb1.gz) 189 Kb
  • Biological Unit Coordinates (1rer.pdb2.gz) 375 Kb
  • LPC: Ligand-Protein Contacts for 1RER
  • CSU: Contacts of Structural Units for 1RER
  • Likely Quarternary Molecular Structure file(s) for 1RER
  • Structure Factors (477 Kb)
  • Retrieve 1RER in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RER from S2C, [Save to disk]
  • Re-refined 1rer structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RER in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RER
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RER, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rera2, region A:1-292 [Jmol] [rasmolscript] [script source]
        - Domain d1rera1, region A:293-391 [Jmol] [rasmolscript] [script source]
        - Domain d1rerb2, region B:1-292 [Jmol] [rasmolscript] [script source]
        - Domain d1rerb1, region B:293-391 [Jmol] [rasmolscript] [script source]
        - Domain d1rerc2, region C:1-292 [Jmol] [rasmolscript] [script source]
        - Domain d1rerc1, region C:293-391 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rer_B] [1rer] [1rer_A] [1rer_C]
  • SWISS-PROT database: [P03315]
  • Belongs to the viral pore-forming membrane fusion protein-4 (vmfp4) family according to TCDB.
  • Domain organization of [POLS_SFV] by SWISSPFAM
    • Other resources with information on 1RER
  • Community annotation for 1RER at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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