1RGE Hydrolase (Guanyloribonuclease) date Jun 05, 1995
title Hydrolase, Guanyloribonuclease
authors J.Sevcik, Z.Dauter, V.S.Lamzin, K.S.Wilson
compound source
Molecule: Ribonuclease
Chain: A, B
Ec: 3.1.27.3
 Organism_scientific: Streptomyces Aureofaciens
Organism_taxid: 1894
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.730 78.560 38.990 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.15 Å
ligand 2GP, SO4 enzyme Hydrolase E.C.3.1.27.3 BRENDA
related structures by homologous chain: 1RGG, 1T2I
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • nuclease activity
  • endonuclease activity
  • endoribonuclease activity
  • ribonuclease activity


    • Primary referenceRibonuclease from Streptomyces aureofaciens at atomic resolution., Sevcik J, Dauter Z, Lamzin VS, Wilson KS, Acta Crystallogr D Biol Crystallogr. 1996 Mar 1;52(Pt 2):327-44. PMID:15299705
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (124 Kb) [Save to disk]
  • Biological Unit Coordinates (1rge.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 1RGE
  • CSU: Contacts of Structural Units for 1RGE
  • Likely Quarternary Molecular Structure file(s) for 1RGE
  • Structure Factors (1282 Kb)
  • Retrieve 1RGE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RGE from S2C, [Save to disk]
  • Re-refined 1rge structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RGE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RGE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1RGE 1RGEA 1RGEB from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RGE, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rgea_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rgeb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rge] [1rge_B] [1rge_A]
  • SWISS-PROT database: [P05798]
  • Domain organization of [RNSA_STRAU] by SWISSPFAM
    • Other resources with information on 1RGE
  • Community annotation for 1RGE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1RGE from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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