1RJC	Immune System Hydrolase	date	Nov 19, 2003
title	Crystal Structure Of The Camelid Single Domain Antibody Cab- Complex With Hen Egg White Lysozyme
authors	E.De Genst, K.Silence, M.A.Ghahroudi, K.Decanniere, R.Loris, J.Ki L.Wyns, S.Muyldermans
compound		source
Molecule: Camelid Heavy Chain Antibody Chain: A Fragment: Vhh Domain, Variable Domain Synonym: 1d2l19 Engineered: Yes		Organism_scientific: Camelus Dromedarius Organism_common: Arabian Camel Organism_taxid: 9838 Tissue: Blood Lymphocytes Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Wk6su Expression_system_vector_type: Plasmid Expression_system_plasmid: Phen06
Molecule: Lysozyme C Chain: B Synonym: 1,4-Beta-N-Acetylmuramidase C, Allergen Gal D 4, G Ec: 3.2.1.17		Organism_scientific: Gallus Gallus Organism_common: Chicken Organism_taxid: 9031 Tissue: Egg White
symmetry	Space Group: P 21 21 21	R_factor 0.220 R_Free 0.235
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.020 68.360 72.050 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	GOL, PO4	enzyme	Hydrolase E.C.3.2.1.17 BRENDA
Gene Ontology	Chain Function Process Component B
Primary reference	Strong in vivo maturation compensates for structurally restricted H3 loops in antibody repertoires., De Genst E, Silence K, Ghahroudi MA, Decanniere K, Loris R, Kinne J, Wyns L, Muyldermans S, J Biol Chem 2005 Jan 19;. PMID:15659390

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk] Biological Unit Coordinates (1rjc.pdb1.gz) 43 Kb LPC: Ligand-Protein Contacts for 1RJC CSU: Contacts of Structural Units for 1RJC Likely Quarternary Molecular Structure file(s) for 1RJC Structure Factors (394 Kb) Retrieve 1RJC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RJC from S2C, [Save to disk] Re-refined 1rjc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RJC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RJC

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1RJC 1RJCA 1RJCB from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RJC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rjc_A] [1rjc] [1rjc_B] SWISS-PROT database: [P00698] Domain organization of [LYSC_CHICK] by SWISSPFAM Domains found in 1RJC: [IGv] [LYZ1 ] by SMART

Other resources with information on 1RJC

Community annotation for 1RJC at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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