1RJJ Structural Genomics, Unknown Function date Nov 19, 2003
title Solution Structure Of A Homodimeric Hypothetical Protein, At Structural Genomics Target From Arabidopsis Thaliana
authors G.Cornilescu, C.C.Cornilescu, Q.Zhao, R.O.Frederick, F.C.Peterso J.L.Markley, Center For Eukaryotic Structural Genomics (Cesg
compound source
Molecule: Expressed Protein
Chain: A, B
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Thale Cress
Organism_taxid: 3702
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSolution structure of a homodimeric hypothetical protein, at5g22580, a structural genomics target from Arabidopsis thaliana., Cornilescu G, Cornilescu CC, Zhao Q, Frederick RO, Peterson FC, Thao S, Markley JL, J Biomol NMR 2004 Jul;29(3):387-90. PMID:15213437
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1175 Kb) [Save to disk]
  • Biological Unit Coordinates (1rjj.pdb1.gz) 58 Kb
  • CSU: Contacts of Structural Units for 1RJJ
  • Original NMR restraints for 1RJJ from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RJJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RJJ from S2C, [Save to disk]
  • View 1RJJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RJJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RJJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rjja_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rjjb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rjj_B] [1rjj_A] [1rjj]
  • SWISS-PROT database: [Q9FK81]
  • Domain organization of [Y5258_ARATH] by SWISSPFAM
  • Domain found in 1RJJ: [Dabb ] by SMART
  • Other resources with information on 1RJJ
  • Community annotation for 1RJJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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