1RKL Transferase date Nov 21, 2003
title Nmr Structure Of Yeast Oligosaccharyltransferase Subunit Ost
authors S.Zubkov, W.J.Lennarz, S.Mohanty
compound source
Molecule: Dolichyl-Diphosphooligosaccharide--Protein Glycosyltransferase 4 Kda Subunit;
Chain: A
Synonym: Oligosaccharyl Transferase 4 Kda Subunit, Otase 4 Subunit;
Ec: 2.4.1.119
Engineered: Yes
Synthetic: Yes
Other_details: The Peptide Was Chemically Synthesized. The Of The Peptide Occurs Naturally In Saccharomyces Cerevisiae
methodSolution NMR
ligand
enzyme Transferase E.C.2.4.1.119 BRENDA
note 1RKL is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the function of a minimembrane protein subunit of yeast oligosaccharyltransferase., Zubkov S, Lennarz WJ, Mohanty S, Proc Natl Acad Sci U S A 2004 Mar 16;101(11):3821-6. Epub 2004 Mar 4. PMID:15001703
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (182 Kb) [Save to disk]
  • Biological Unit Coordinates (1rkl.pdb1.gz) 9 Kb
  • CSU: Contacts of Structural Units for 1RKL
  • Original NMR restraints for 1RKL from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RKL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RKL from S2C, [Save to disk]
  • View 1RKL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RKL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RKL, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rkla_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rkl_A] [1rkl]
  • SWISS-PROT database: [Q99380]
  • Domain organization of [OST4_YEAST] by SWISSPFAM
  • Other resources with information on 1RKL
  • Community annotation for 1RKL at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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