1RKR Electron Transport date May 17, 1997
title Crystal Structure Of Azurin-I From Alcaligenes Xylosoxidans 11015
authors C.Li, T.Inoue, M.Gotowda, S.Suzuki, K.Yamaguchi, K.Kataoka, Y.Kai
compound source
Molecule: Azurin-I
Chain: A, B, C, D
 Organism_scientific: Achromobacter Xylosoxidans
Organism_taxid: 85698
Strain: Ncimb 11015
symmetry Space Group: C 1 2 1
R_factor 0.173 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.670 54.260 74.550 90.00 95.99 90.00
method X-Ray Diffractionresolution 2.45 Å
ligand CU enzyme
related structures by homologous chain: 1A4C, 1AG0, 1AZN
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • electron transfer activity


    • Primary referenceStructure of azurin I from the denitrifying bacterium Alcaligenes xylosoxidans NCIMB 11015 at 2.45 A resolution., Li C, Inoue T, Gotowda M, Suzuki S, Yamaguchi K, Kunishige K, Kai Y, Acta Crystallogr D Biol Crystallogr 1998 May 1;54 ( Pt 3):347-54. PMID:9761902
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (1rkr.pdb1.gz) 22 Kb
  • Biological Unit Coordinates (1rkr.pdb2.gz) 22 Kb
  • Biological Unit Coordinates (1rkr.pdb3.gz) 21 Kb
  • Biological Unit Coordinates (1rkr.pdb4.gz) 22 Kb
  • Biological Unit Coordinates (1rkr.pdb5.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 1RKR
  • CSU: Contacts of Structural Units for 1RKR
  • Likely Quarternary Molecular Structure file(s) for 1RKR
  • Structure Factors (79 Kb)
  • Retrieve 1RKR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RKR from S2C, [Save to disk]
  • Re-refined 1rkr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RKR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RKR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RKR, from MSDmotif at EBI
  • Genome occurence of 1RKR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rkra_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rkrb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1rkrc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1rkrd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rkr_A] [1rkr_D] [1rkr_C] [1rkr_B] [1rkr]
  • SWISS-PROT database: [P56547]
  • Domain organization of [AZUR1_ALCXX] by SWISSPFAM
    • Other resources with information on 1RKR
  • Community annotation for 1RKR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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