1RL5 Toxin date Nov 25, 2003
title Nmr Structure With Tightly Bound Water Molecule Of Cytotoxin Naja Oxiana In Aqueous Solution (Major Form)
authors M.A.Dubinnyi, Y.E.Pustovalova, P.V.Dubovskii, Y.N.Utkin, A.S.Ars
compound source
Molecule: Cytotoxin 1
Chain: A
 Organism_scientific: Naja Oxiana
Organism_common: Central Asian Cobra
Organism_taxid: 8657
Secretion: Venome
methodSolution NMR
related structures by homologous chain: 1CDT, 1FFJ
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceInteraction of three-finger toxins with phospholipid membranes: comparison of S- and P-type cytotoxins., Dubovskii PV, Lesovoy DM, Dubinnyi MA, Konshina AG, Utkin YN, Efremov RG, Arseniev AS, Biochem J 2005 May 1;387(Pt 3):807-15. PMID:15584897
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (320 Kb) [Save to disk]
  • Biological Unit Coordinates (1rl5.pdb1.gz) 16 Kb
  • CSU: Contacts of Structural Units for 1RL5
  • Original NMR restraints for 1RL5 from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1RL5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RL5 from S2C, [Save to disk]
    • View 1RL5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RL5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RL5, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rl5_A] [1rl5]
  • SWISS-PROT database: [P01451]
  • Domain organization of [CX1_NAJOX] by SWISSPFAM
    • Other resources with information on 1RL5
  • Community annotation for 1RL5 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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