1RLF Signal Transduction Protein date Jul 09, 1998
title Structure Determination Of The Ras-Binding Domain Of The Ral Guanine Nucleotide Exchange Factor Rlf, Nmr, 10 Structures
authors D.Esser, B.Bauer, R.M.F.Wolthuis, A.Wittinghofer, R.H.Cool, P.Bay
compound source
Molecule: Rlf
Chain: A
Fragment: Ras Binding Domain, Residues 646 - 735
Synonym: Rlf-Rbd
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex4t3
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of the Ras-binding domain of the Ral-specific guanine nucleotide exchange factor Rlf., Esser D, Bauer B, Wolthuis RM, Wittinghofer A, Cool RH, Bayer P, Biochemistry 1998 Sep 29;37(39):13453-62. PMID:9753431
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (238 Kb) [Save to disk]
  • Biological Unit Coordinates (1rlf.pdb1.gz) 24 Kb
  • CSU: Contacts of Structural Units for 1RLF
  • Retrieve 1RLF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RLF from S2C, [Save to disk]
  • View 1RLF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RLF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RLF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rlf__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rlf] [1rlf_A]
  • SWISS-PROT database: [Q61193]
  • Domain organization of [RGL2_MOUSE] by SWISSPFAM
  • Domain found in 1RLF: [RA ] by SMART
  • Other resources with information on 1RLF
  • Community annotation for 1RLF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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