1RO3 Cell Adhesion date Dec 01, 2003
title New Structural Insights On Short Disintegrin Echistatin By N
authors D.Monleon, V.Esteve, J.J.Calvete, C.Marcinkiewicz, B.Celda
compound source
Molecule: Disintegrin Echistatin
Chain: A
Synonym: Platelet Aggregation Activation Inhibitor, Carinat
 Organism_scientific: Echis Carinatus
Organism_common: Saw-Scaled Viper
Organism_taxid: 40353
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


    • Primary referenceConformation and concerted dynamics of the integrin-binding site and the C-terminal region of echistatin revealed by homonuclear NMR., Monleon D, Esteve V, Kovacs H, Calvete JJ, Celda B, Biochem J 2005 Apr 1;387(Pt 1):57-66. PMID:15535803
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (213 Kb) [Save to disk]
  • Biological Unit Coordinates (1ro3.pdb1.gz) 11 Kb
  • CSU: Contacts of Structural Units for 1RO3
  • Original NMR restraints for 1RO3 from PDB
  • Retrieve 1RO3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RO3 from S2C, [Save to disk]
    • View 1RO3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RO3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RO3, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ro3a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ro3] [1ro3_A]
  • SWISS-PROT database: [P17347]
  • Domain organization of [DISEA_ECHCA] by SWISSPFAM
  • Domain found in 1RO3: [DISIN ] by SMART
    • Other resources with information on 1RO3
  • Community annotation for 1RO3 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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