1ROV	Oxidoreductase	date	Dec 02, 2003
title	Lipoxygenase-3 Treated With Cumene Hydroperoxide
authors	A.Vahedi-Faridi, P.A.Brault, P.Shah, Y.W.Kim, W.R.Dunham, M.O.Funk
compound		source
Molecule: Seed Lipoxygenase-3 Chain: A Synonym: L-3 Ec: 1.13.11.12		Organism_scientific: Glycine Max Organism_common: Soybean Organism_taxid: 3847 Strain: L. Merrill Cv Resnick
symmetry	Space Group: C 1 2 1	R_factor 0.221 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 111.001 136.901 61.512 90.00 96.24 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FE, HLU, HTR	enzyme	Oxidoreductase E.C.1.13.11.12 BRENDA
related structures	by homologous chain: 1IK3, 1RRL
Gene Ontology	Chain Function Process Component A
Primary reference	Interaction between non-heme iron of lipoxygenases and cumene hydroperoxide: basis for enzyme activation, inactivation, and inhibition., Vahedi-Faridi A, Brault PA, Shah P, Kim YW, Dunham WR, Funk MO Jr, J Am Chem Soc 2004 Feb 25;126(7):2006-15. PMID:14971933

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (148 Kb) [Save to disk] Biological Unit Coordinates (1rov.pdb1.gz) 141 Kb LPC: Ligand-Protein Contacts for 1ROV CSU: Contacts of Structural Units for 1ROV Likely Quarternary Molecular Structure file(s) for 1ROV Structure Factors (414 Kb) Retrieve 1ROV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1ROV from S2C, [Save to disk] Re-refined 1rov structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1ROV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1ROV

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1ROV, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rova1, region A:168-857 [Jmol] [rasmolscript] [script source]     - Domain d1rova2, region A:9-167 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rov_A] [1rov] SWISS-PROT database: [P09186] Domain organization of [LOX3_SOYBN] by SWISSPFAM Domain found in 1ROV: [LH2 ] by SMART

Other resources with information on 1ROV

Community annotation for 1ROV at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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