1RPE Gene Regulation Dna date Mar 24, 1993
title The Phage 434 Or2r1-69 Complex At 2.5 Angstroms Resolution
authors L.J.W.Shimon, S.C.Harrison
compound source
Molecule: Dna (5'- D(Tpaptpapcpapaptpgptpaptpcptptpgpt Ptpt
Chain: B
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'- D(Apcpapapapcpapapgpaptpapcpaptptpg Ptpa
Chain: A
Engineered: Yes
Synthetic: Yes

Molecule: Protein (434 Repressor)
Chain: L, R
Organism_scientific: Phage 434
Organism_taxid: 10712
symmetry Space Group: P 21 21 21
R_factor 0.209 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
149.290 64.290 27.690 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
related structures by homologous chain: 1PER, 1SQ8
Gene
Ontology
ChainFunctionProcessComponent
R, L


Primary referenceThe phage 434 OR2/R1-69 complex at 2.5 A resolution., Shimon LJ, Harrison SC, J Mol Biol 1993 Aug 5;232(3):826-38. PMID:8355273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (1rpe.pdb1.gz) 36 Kb
  • CSU: Contacts of Structural Units for 1RPE
  • Likely Quarternary Molecular Structure file(s) for 1RPE
  • Retrieve 1RPE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RPE from S2C, [Save to disk]
    • View 1RPE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RPE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RPE, from MSDmotif at EBI
  • Genome occurence of 1RPE's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rpel_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1rper_, region R [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rpe_R] [1rpe_L] [1rpe_A] [1rpe] [1rpe_B]
  • SWISS-PROT database: [P16117]
  • Domain organization of [RPC1_BP434] by SWISSPFAM
  • Domain found in 1RPE: [HTH_XRE ] by SMART
    • Other resources with information on 1RPE
  • Community annotation for 1RPE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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