1RPF Hydrolase(Phosphoric Diester) date Aug 29, 1994
title The Structures Of Rnase Complexed With 3'-Cmp And D(Cpa): Active Site Conformation And Conserved Water Molecules
authors I.Zegers, L.Wyns, R.Palmer
compound source
Molecule: Ribonuclease A
Chain: A
Ec: 3.1.27.5
Engineered: Yes
 Organism_scientific: Bos Taurus
Organism_common: Cattle
Organism_taxid: 9913
Cell_line: S2
Organ: Pancreas
symmetry Space Group: P 32 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.250 65.250 65.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand C3P BindingDB enzyme Hydrolase E.C.3.1.27.5 BRENDA
related structures by homologous chain: 1J80, 1RPH
Gene
Ontology
ChainFunctionProcessComponent
A
  • ribonuclease A activity


    • Primary referenceThe structures of RNase A complexed with 3'-CMP and d(CpA): active site conformation and conserved water molecules., Zegers I, Maes D, Dao-Thi MH, Poortmans F, Palmer R, Wyns L, Protein Sci 1994 Dec;3(12):2322-39. PMID:7756988
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1rpf.pdb1.gz) 22 Kb
  • LPC: Ligand-Protein Contacts for 1RPF
  • CSU: Contacts of Structural Units for 1RPF
  • Likely Quarternary Molecular Structure file(s) for 1RPF
  • Retrieve 1RPF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RPF from S2C, [Save to disk]
    • View 1RPF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RPF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RPF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rpf__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rpf] [1rpf_A]
  • SWISS-PROT database: [P61823]
  • Domain organization of [RNAS1_BOVIN] by SWISSPFAM
  • Domain found in 1RPF: [RNAse_Pc ] by SMART
    • Other resources with information on 1RPF
  • Community annotation for 1RPF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1RPF from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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