1RRH	Oxidoreductase	date	Dec 08, 2003
title	Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At 2.0 Resolution
authors	O.Y.Borbulevych, J.Jankun, E.Skrzypczak-Jankun
compound		source
Molecule: Seed Lipoxygenase-3 Chain: A Synonym: L-3 Ec: 1.13.11.12		Organism_scientific: Glycine Max Organism_common: Soybean Organism_taxid: 3847 Strain: Soybean Provar Cultivar
symmetry	Space Group: C 1 2 1	R_factor 0.179 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 112.709 137.211 61.792 90.00 95.51 90.00
method	X-Ray Diffraction	resolution	2.00 Å
ligand	FE2	enzyme	Oxidoreductase E.C.1.13.11.12 BRENDA
related structures	by homologous chain: 1FGM, 1IK3
Gene Ontology	Chain Function Process Component A
Primary reference	Effect of crystal freezing and small-molecule binding on internal cavity size in a large protein: X-ray and docking studies of lipoxygenase at ambient and low temperature at 2.0 A resolution., Skrzypczak-Jankun E, Borbulevych OY, Zavodszky MI, Baranski MR, Padmanabhan K, Petricek V, Jankun J, Acta Crystallogr D Biol Crystallogr. 2006 Jul;62(Pt 7):766-75. Epub 2006, Jun 20. PMID:16790932

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (1rrh.pdb1.gz) 145 Kb LPC: Ligand-Protein Contacts for 1RRH CSU: Contacts of Structural Units for 1RRH Likely Quarternary Molecular Structure file(s) for 1RRH Structure Factors (747 Kb) Retrieve 1RRH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RRH from S2C, [Save to disk] Re-refined 1rrh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RRH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RRH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RRH, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rrha1, region A:186-857 [Jmol] [rasmolscript] [script source]     - Domain d1rrha2, region A:8-185 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rrh] [1rrh_A] SWISS-PROT database: [P09186] Domain organization of [LOX3_SOYBN] by SWISSPFAM Domain found in 1RRH: [LH2 ] by SMART

Other resources with information on 1RRH

Community annotation for 1RRH at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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