1RRO Calcium-Binding Protein date Aug 27, 1992
title Refinement Of Recombinant Oncomodulin At 1.30 Angstroms Reso
authors F.R.Ahmed, D.R.Rose, S.V.Evans, M.E.Pippy, R.To
compound source
Molecule: Rat Oncomodulin
Chain: A
Engineered: Yes
Organism_scientific: Rattus Rattus
Organism_common: Black Rat
Organism_taxid: 10117
Organ: Liver
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
39.700 65.120 32.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CA enzyme
related structures by homologous chain: 1OMD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefinement of recombinant oncomodulin at 1.30 A resolution., Ahmed FR, Rose DR, Evans SV, Pippy ME, To R, J Mol Biol 1993 Apr 20;230(4):1216-24. PMID:8487302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (24 Kb) [Save to disk]
  • Biological Unit Coordinates (1rro.pdb1.gz) 20 Kb
  • LPC: Ligand-Protein Contacts for 1RRO
  • CSU: Contacts of Structural Units for 1RRO
  • Likely Quarternary Molecular Structure file(s) for 1RRO
  • Structure Factors (190 Kb)
  • Retrieve 1RRO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RRO from S2C, [Save to disk]
  • Re-refined 1rro structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RRO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RRO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1RRO from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RRO, from MSDmotif at EBI
  • Genome occurence of 1RRO's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rro__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rro] [1rro_A]
  • SWISS-PROT database: [P02631]
  • Domain organization of [ONCO_RAT] by SWISSPFAM
  • Domain found in 1RRO: [EFh ] by SMART
  • Other resources with information on 1RRO
  • Community annotation for 1RRO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Domain movements in 1RRO from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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