OCA Atlas for 1RRP

1RRP

Complex (Small Gtpase Nuclear Protein)

date

Jan 15, 1999

title

Structure Of The Ran-Gppnhp-Ranbd1 Complex

authors

I.R.Vetter, C.Nowak, T.Nishimoto, J.Kuhlmann, A.Wittinghofer

compound

source

Molecule: Ran
Chain: A, C
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_plasmid: Gst-Fusion

Molecule: Nuclear Pore Complex Protein Nup358
Chain: B, D
Engineered: Yes

symmetry

Space Group: C 1 2 1

R_factor

0.252

R_Free

0.304

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma
121.339	139.463	91.654	90.00	135.78	90.00

method

X-Ray Diffraction

resolution

2.96 Å

ligand

GNP, MG

enzyme

related structures

by homologous chain: 1K5D, 1QBK

Gene
Ontology

Chain	Function	Process	Component
A, C		intracellular transport of v...
D, B

Primary reference

Structure of a Ran-binding domain complexed with Ran bound to a GTP analogue: implications for nuclear transport., Vetter IR, Nowak C, Nishimoto T, Kuhlmann J, Wittinghofer A, Nature 1999 Mar 4;398(6722):39-46. PMID:10078529

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]

Biological Unit Coordinates (1rrp.pdb1.gz) 58 Kb

Biological Unit Coordinates (1rrp.pdb2.gz) 55 Kb

Biological Unit Coordinates (1rrp.pdb3.gz) 215 Kb

Biological Unit Coordinates (1rrp.pdb4.gz) 109 Kb

LPC: Ligand-Protein Contacts for 1RRP

CSU: Contacts of Structural Units for 1RRP

Likely Quarternary Molecular Structure file(s) for 1RRP

Structure Factors (202 Kb)

Retrieve 1RRP in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 1RRP from S2C, [Save to disk]

Re-refined 1rrp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RRP in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RRP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 1RRP, from MSDmotif at EBI

Classification of representative domains in scop (Structural Classification of Proteins)
- Domain d1rrpa_, region A [Jmol] [rasmolscript] [script source]
- Domain d1rrpb_, region B [Jmol] [rasmolscript] [script source]
- Domain d1rrpc_, region C [Jmol] [rasmolscript] [script source]
- Domain d1rrpd_, region D [Jmol] [rasmolscript] [script source]

Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH

Summaries and structural analyses of PDB data files from PDBSum

Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rrp] [1rrp_A] [1rrp_C] [1rrp_D] [1rrp_B]

SWISS-PROT database: [P62826] [P49792]

Belongs to the eukaryotic nuclear pore complex (e-npc) family

according to TCDB.

Belongs to the small nuclear rna exporter (snrna-e)

according to TCDB.

Domain organization of [RAN_HUMAN] [RBP2_HUMAN] by SWISSPFAM

Domains found in 1RRP: [RAN] [RanBD ] by SMART

Other resources with information on 1RRP

Community annotation for 1RRP at PDBWiki (http://pdbwiki.org)

MMDB (Entrez's Structure Database)

Movements, Movies and Images

Domain movements in 1RRP from the Database of Macromolecular Movements.

Images from IMB Jena Image Library of Biological Macromolecules.

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]