1RTT Structural Genomics, Unknown Function date Dec 10, 2003
title Crystal Structure Determination Of A Putative Nadh-Dependent Using Sulfur Anomalous Signal
authors R.Agarwal, S.Swaminathan, S.K.Burley, New York Sgx Research Cen Structural Genomics (Nysgxrc)
compound source
Molecule: Conserved Hypothetical Protein
Chain: A
Engineered: Yes
 Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 208964
Strain: Pao1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.211 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.071 70.386 85.382 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.28 Å
ligand SO4 enzyme
note 1RTT is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal., Agarwal R, Bonanno JB, Burley SK, Swaminathan S, Acta Crystallogr D Biol Crystallogr. 2006 Apr;62(Pt 4):383-91. Epub 2006, Mar 18. PMID:16552139
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (1rtt.pdb1.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 1RTT
  • CSU: Contacts of Structural Units for 1RTT
  • Likely Quarternary Molecular Structure file(s) for 1RTT
  • Structure Factors (362 Kb)
  • Retrieve 1RTT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RTT from S2C, [Save to disk]
  • Re-refined 1rtt structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1RTT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1RTT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1RTT from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RTT, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rtta_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rtt] [1rtt_A]
  • SWISS-PROT database: [Q9I4D4]
  • Domain organization of [Q9I4D4_PSEAE] by SWISSPFAM
    • Other resources with information on 1RTT
  • Community annotation for 1RTT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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