1RUM	Immune System	date	Dec 11, 2003
title	Crystal Structure (F) Of H2o2-Soaked Cationic Cyclization An Fab At Ph 8.5 With A Data Set Collected At Ssrl Beamline 9-
authors	X.Zhu, P.Wentworth Jr., A.D.Wentworth, A.Eschenmoser, R.A.Lerner I.A.Wilson
compound		source
Molecule: Immunoglobulin Igg2a, Light Chain Chain: L Fragment: Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: 129g1x+
Molecule: Immunoglobulin Igg2a, Heavy Chain Chain: H Fragment: Fab		Organism_scientific: Mus Musculus Organism_common: House Mouse Organism_taxid: 10090 Strain: 129g1x+
symmetry	Space Group: P 41 21 2	R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma 64.386 64.386 266.983 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.48 Å
ligand	4HT, BEZ, GOL	enzyme
related structures	by homologous chain: 1Q9Q, 1Q9R, 1UAC
Gene Ontology	Chain Function Process Component L
Primary reference	Probing the antibody-catalyzed water-oxidation pathway at atomic resolution., Zhu X, Wentworth P Jr, Wentworth AD, Eschenmoser A, Lerner RA, Wilson IA, Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2247-52. PMID:14982995

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (169 Kb) [Save to disk] Biological Unit Coordinates (1rum.pdb1.gz) 164 Kb LPC: Ligand-Protein Contacts for 1RUM CSU: Contacts of Structural Units for 1RUM Likely Quarternary Molecular Structure file(s) for 1RUM Structure Factors (837 Kb) Retrieve 1RUM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RUM from S2C, [Save to disk] Re-refined 1rum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RUM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RUM

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1RUM 1RUMH 1RUML from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RUM, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rumh1, region H:1-113 [Jmol] [rasmolscript] [script source]     - Domain d1rumh2, region H:114-231 [Jmol] [rasmolscript] [script source]     - Domain d1ruml1, region L:1-107 [Jmol] [rasmolscript] [script source]     - Domain d1ruml2, region L:108-214 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rum] [1rum_L] [1rum_H] SWISS-PROT database: [P01865] Domain organization of [GCAM_MOUSE] by SWISSPFAM Domains found in 1RUM: [IG_like] [IGv ] by SMART

Other resources with information on 1RUM

Community annotation for 1RUM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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