1RUZ Viral Protein date Dec 12, 2003
title 1918 H1 Hemagglutinin
authors J.J.Skehel, S.J.Gamblin, L.F.Haire, R.J.Russell, D.J.Stevens, B.X N.Vasisht, D.A.Steinhauer, R.S.Daniels
compound source
Molecule: Hemagglutinin
Chain: H, J, L
Other_details: Hemagglutinin Ha1 Chain
Organism_scientific: Influenza A Virus (Asouth Carolina1 (H1n1));
Organism_taxid: 59375
Strain: A-South Carolina-1-18 (H1n1)
Cell: Vaccinia Virus Infected Cv1 Cells

Molecule: Hemagglutinin
Chain: I, K, M
Other_details: Hemagglutinin Ha2 Chain

Organism_scientific: Influenza A Virus (Asouth Carolina1 (H1n1));
Organism_taxid: 59375
Strain: A-South Carolina-1-18 (H1n1)
Cell: Vaccinia Virus Infected Cv1 Cells
symmetry Space Group: P 41 21 2
R_factor 0.248 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.461 171.461 153.445 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand NAG, NDG enzyme
note 1RUZ (Molecule of the Month:pdb76)
related structures by homologous chain: 1MQL, 1RD8, 1RUY, 3HMG
Gene
Ontology
ChainFunctionProcessComponent
H, J, L


M, K, I


Primary referenceThe structure and receptor binding properties of the 1918 influenza hemagglutinin., Gamblin SJ, Haire LF, Russell RJ, Stevens DJ, Xiao B, Ha Y, Vasisht N, Steinhauer DA, Daniels RS, Elliot A, Wiley DC, Skehel JJ, Science 2004 Mar 19;303(5665):1838-42. Epub 2004 Feb 5. PMID:14764886
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (248 Kb) [Save to disk]
  • Biological Unit Coordinates (1ruz.pdb1.gz) 242 Kb
  • LPC: Ligand-Protein Contacts for 1RUZ
  • CSU: Contacts of Structural Units for 1RUZ
  • Likely Quarternary Molecular Structure file(s) for 1RUZ
  • Retrieve 1RUZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RUZ from S2C, [Save to disk]
  • View 1RUZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RUZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RUZ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ruzh_, region H [Jmol] [rasmolscript] [script source]
        - Domain d1ruzi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1ruzj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1ruzk_, region K [Jmol] [rasmolscript] [script source]
        - Domain d1ruzl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1ruzm_, region M [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ruz_I] [1ruz_J] [1ruz_M] [1ruz] [1ruz_H] [1ruz_L] [1ruz_K]
  • SWISS-PROT database: [Q9WFX3]
  • Domain organization of [HEMA_I18A0] by SWISSPFAM
  • Other resources with information on 1RUZ
  • Community annotation for 1RUZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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