1RVJ Photosynthesis date Dec 14, 2003
title Photosynthetic Reaction Center Double Mutant From Rhodobacte Sphaeroides With Asp L213 Replaced With Asn And Arg H177 Re With His
authors Q.Xu, H.L.Axelrod, E.C.Abresch, M.L.Paddock, M.Y.Okamura, G.Feher
compound source
Molecule: Reaction Center Protein L Chain
Chain: L
Synonym: Photosynthetic Reaction Center L Subunit
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Pufl
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063

Molecule: Reaction Center Protein M Chain
Chain: M
Synonym: Photosynthetic Reaction Center M Subunit
Engineered: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Pufm
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063

Molecule: Reaction Center Protein H Chain
Chain: H
Synonym: Photosynthetic Reaction Center H Subunit
Engineered: Yes
Mutation: Yes

Organism_scientific: Rhodobacter Sphaeroides
Organism_taxid: 1063
Gene: Puha
Expression_system: Rhodobacter Sphaeroides
Expression_system_taxid: 1063
symmetry Space Group: P 31 2 1
R_factor 0.218 R_Free 0.237
crystal
cell
length a length b length c angle alpha angle beta angle gamma
138.242 138.242 184.396 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand BCL, BPH, CDL, FE2, LDA, PO4, SPO, U10 enzyme
related structures by homologous chain: 1E14, 1RGN
Gene
Ontology
ChainFunctionProcessComponent
H
  • electron transporter, transf...


  • L


    M


    Primary referenceX-Ray structure determination of three mutants of the bacterial photosynthetic reaction centers from Rb. sphaeroides; altered proton transfer pathways., Xu Q, Axelrod HL, Abresch EC, Paddock ML, Okamura MY, Feher G, Structure (Camb) 2004 Apr;12(4):703-15. PMID:15062092
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (1rvj.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1RVJ
  • CSU: Contacts of Structural Units for 1RVJ
  • Likely Quarternary Molecular Structure file(s) for 1RVJ
  • Structure Factors (443 Kb)
  • Retrieve 1RVJ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RVJ from S2C, [Save to disk]
  • Re-refined 1rvj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RVJ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RVJ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RVJ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rvjh2, region H:11-35 [Jmol] [rasmolscript] [script source]
        - Domain d1rvjh1, region H:36-248 [Jmol] [rasmolscript] [script source]
        - Domain d1rvjl_, region L [Jmol] [rasmolscript] [script source]
        - Domain d1rvjm_, region M [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rvj] [1rvj_L] [1rvj_H] [1rvj_M]
  • SWISS-PROT database: [P0C0Y7] [P0C0Y8] [P0C0Y9]
  • Belongs to the photosynthetic reaction center (prc) family according to TCDB.
  • Domain organization of [RCEH_RHOSH] [RCEL_RHOSH] [RCEM_RHOSH] by SWISSPFAM
  • Other resources with information on 1RVJ
  • Community annotation for 1RVJ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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