1RWY Calcium-Binding Protein date Dec 17, 2003
title Crystal Structure Of Rat Alpha-Parvalbumin At 1.05 Resolutio
authors C.A.Bottoms, J.P.Schuermann, S.Agah, M.T.Henzl, J.J.Tanner
compound source
Molecule: Parvalbumin Alpha
Chain: A, B, C
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Tissue: Fast-Twitch Muscle
Gene: Pvalb, Pva
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Dh5alpha
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbluescript
symmetry Space Group: P 21 21 21
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.838 54.708 153.643 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.05 Å
ligand ACY, CA, NH4, PG4, SO4 enzyme
related structures by homologous chain: 1G33
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceCrystal structure of rat alpha-parvalbumin at 1.05 Angstrom resolution., Bottoms CA, Schuermann JP, Agah S, Henzl MT, Tanner JJ, Protein Sci 2004 Jul;13(7):1724-34. Epub 2004 May 28. PMID:15169955
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (1rwy.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (1rwy.pdb2.gz) 40 Kb
  • Biological Unit Coordinates (1rwy.pdb3.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1RWY
  • CSU: Contacts of Structural Units for 1RWY
  • Likely Quarternary Molecular Structure file(s) for 1RWY
  • Structure Factors (1229 Kb)
  • Retrieve 1RWY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1RWY from S2C, [Save to disk]
  • Re-refined 1rwy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1RWY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1RWY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1RWY 1RWYA 1RWYB 1RWYC from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1RWY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1rwya_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1rwyb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1rwyc_, region C [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1rwy] [1rwy_A] [1rwy_C] [1rwy_B]
  • SWISS-PROT database: [P02625]
  • Domain organization of [PRVA_RAT] by SWISSPFAM
  • Domain found in 1RWY: [EFh ] by SMART
  • Other resources with information on 1RWY
  • Community annotation for 1RWY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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