1RX0	Oxidoreductase	date	Dec 18, 2003
title	Crystal Structure Of Isobutyryl-Coa Dehydrogenase Complexed Substrateligand.
authors	K.P.Battaile, T.V.Nguyen, J.Vockley, J.J.Kim
compound		source
Molecule: Acyl-Coa Dehydrogenase Family Member 8, Mitochond Chain: A, B, C, D Synonym: Acad-8, Isobutyryl-Coa Dehydrogenase, Activator- R Cofactor 42 Kda Component, Arc42; Ec: 1.3.99.- Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Acad8, Arc42 Expression_system: Escherichia Coli Bl21 Expression_system_taxid: 511693 Expression_system_strain: Bl21 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 21 21 21	R_factor 0.179 R_Free 0.192
crystal cell	length a length b length c angle alpha angle beta angle gamma 97.204 134.343 189.641 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.77 Å
ligand	2MC, ACY, EDO, FAD	enzyme	Oxidoreductase E.C.1.3.99 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structures of Isobutyryl-CoA Dehydrogenase and Enzyme-Product Complex: COMPARISON WITH ISOVALERYL- AND SHORT-CHAIN ACYL-COA DEHYDROGENASES., Battaile KP, Nguyen TV, Vockley J, Kim JJ, J Biol Chem 2004 Apr 16;279(16):16526-34. Epub 2004 Jan 28. PMID:14752098

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk] Biological Unit Coordinates (1rx0.pdb1.gz) 271 Kb LPC: Ligand-Protein Contacts for 1RX0 CSU: Contacts of Structural Units for 1RX0 Likely Quarternary Molecular Structure file(s) for 1RX0 Structure Factors (1872 Kb) Retrieve 1RX0 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RX0 from S2C, [Save to disk] Re-refined 1rx0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RX0 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RX0

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RX0, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rx0a2, region A:10-240 [Jmol] [rasmolscript] [script source]     - Domain d1rx0a1, region A:241-393 [Jmol] [rasmolscript] [script source]     - Domain d1rx0b2, region B:10-240 [Jmol] [rasmolscript] [script source]     - Domain d1rx0b1, region B:241-393 [Jmol] [rasmolscript] [script source]     - Domain d1rx0c2, region C:11-240 [Jmol] [rasmolscript] [script source]     - Domain d1rx0c1, region C:241-393 [Jmol] [rasmolscript] [script source]     - Domain d1rx0d2, region D:10-240 [Jmol] [rasmolscript] [script source]     - Domain d1rx0d1, region D:241-393 [Jmol] [rasmolscript] [script source]

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rx0] [1rx0_D] [1rx0_B] [1rx0_C] [1rx0_A] SWISS-PROT database: [Q9UKU7] Domain organization of [ACAD8_HUMAN] by SWISSPFAM

Other resources with information on 1RX0

Community annotation for 1RX0 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---