1RXO	Lyase (Carbon-Carbon)	date	Dec 06, 1996
title	Activated Spinach Rubisco In Complex With Its Substrate Ribu Bisphosphate And Calcium
authors	T.C.Taylor, I.Andersson
compound		source
Molecule: Ribulose Bisphosphate Carboxylaseoxygenase Chain: L, B, E, H Synonym: Rubisco Ec: 4.1.1.39		Organism_scientific: Spinacia Oleracea Organism_common: Spinach Organism_taxid: 3562 Organ: Leaf
Molecule: Ribulose Bisphosphate Carboxylaseoxygenase Chain: S, C, F, I Synonym: Rubisco Ec: 4.1.1.39		Organism_scientific: Spinacia Oleracea Organism_common: Spinach Organism_taxid: 3562 Organ: Leaf
symmetry	Space Group: C 2 2 21	R_factor 0.205 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 157.600 158.500 202.600 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	CA, KCX, RUB	enzyme	Lyase E.C.4.1.1.39 BRENDA
related structures	by homologous chain: 1AA1, 1RBL, 3RUB
Gene Ontology	Chain Function Process Component E, B, H, L S, F, C, I
Primary reference	The structure of the complex between rubisco and its natural substrate ribulose 1,5-bisphosphate., Taylor TC, Andersson I, J Mol Biol 1997 Jan 31;265(4):432-44. PMID:9034362

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (396 Kb) [Save to disk] Biological Unit Coordinates (1rxo.pdb1.gz) 774 Kb LPC: Ligand-Protein Contacts for 1RXO CSU: Contacts of Structural Units for 1RXO Likely Quarternary Molecular Structure file(s) for 1RXO Structure Factors (1003 Kb) Retrieve 1RXO in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1RXO from S2C, [Save to disk] Re-refined 1rxo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1RXO in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1RXO

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1RXO, from MSDmotif at EBI Genome occurence of 1RXO's fold from GeneCensus Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1rxob1, region B:148-463 [Jmol] [rasmolscript] [script source]     - Domain d1rxob2, region B:9-147 [Jmol] [rasmolscript] [script source]     - Domain d1rxoc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1rxoe1, region E:148-463 [Jmol] [rasmolscript] [script source]     - Domain d1rxoe2, region E:9-147 [Jmol] [rasmolscript] [script source]     - Domain d1rxof_, region F [Jmol] [rasmolscript] [script source]     - Domain d1rxoh1, region H:148-463 [Jmol] [rasmolscript] [script source]     - Domain d1rxoh2, region H:9-147 [Jmol] [rasmolscript] [script source]     - Domain d1rxoi_, region I [Jmol] [rasmolscript] [script source]     - Domain d1rxol1, region L:148-463 [Jmol] [rasmolscript] [script source]     - Domain d1rxol2, region L:9-147 [Jmol] [rasmolscript] [script source]     - Domain d1rxos_, region S [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1rxo_L] [1rxo_C] [1rxo] [1rxo_H] [1rxo_B] [1rxo_E] [1rxo_F] [1rxo_S] [1rxo_I] SWISS-PROT database: [P00875] [P00870] Domain organization of [RBL_SPIOL] [RBS1_SPIOL] by SWISSPFAM Domain found in 1RXO: [RuBisCO_small ] by SMART

Other resources with information on 1RXO

Community annotation for 1RXO at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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