1RZT | Transferase Dna | date | Dec 29, 2003 |
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title | Crystal Structure Of Dna Polymerase Lambda Complexed With A Nucleotide Gap Dna Molecule | ||||||||||||||
authors | L.C.Pedersen, M.Garcia-Diaz, K.Bebenek, J.M.Krahn, L.Blanco, T.A. | ||||||||||||||
compound | source | ||||||||||||||
Molecule: 5'-D(Cpgpgpcpapapcpgpcpapc)-3' Chain: B, F, J, N Engineered: Yes Other_details: Template Dna |
Synthetic: Yes | ||||||||||||||
Molecule: 5'-D(Gptpgpcpg)-3' Chain: C, G, K, O Engineered: Yes Other_details: Upstream Primer Dna |
Synthetic: Yes | ||||||||||||||
Molecule: 5'-D(Pgpcpcpg)-3' Chain: D, H, L, P Engineered: Yes Other_details: Downstream Primer Dna |
Synthetic: Yes | ||||||||||||||
Molecule: Dna Polymerase Lambda Chain: A, E, I, M Fragment: Catalytic Domain Of Polymerase Lambda Synonym: Pol Lambda, Dna Polymerase Kappa, Dna Polymerase B Beta2; Ec: 2.7.7.7 Engineered: Yes Mutation: Yes |
Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Poll Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21-Codonplus(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet-22b | ||||||||||||||
symmetry | Space Group: P 21 21 2 |
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crystal cell |
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method | X-Ray Diffraction | resolution | 2.10 Å | ||||||||||||
ligand | EDO, NA | enzyme | Transferase E.C.2.7.7.7 BRENDA | ||||||||||||
related structures | by homologous chain: 1XSN, 1XSP | ||||||||||||||
Gene Ontology |
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Primary reference | A structural solution for the DNA polymerase lambda-dependent repair of DNA gaps with minimal homology., Garcia-Diaz M, Bebenek K, Krahn JM, Blanco L, Kunkel TA, Pedersen LC, Mol Cell 2004 Feb 27;13(4):561-72. PMID:14992725 |
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Structure-derived information |
- Domain d1rzta1, region A:249-328 [Jmol] [rasmolscript] [script source] - Domain d1rzta2, region A:329-385 [Jmol] [rasmolscript] [script source] - Domain d1rzta3, region A:386-575 [Jmol] [rasmolscript] [script source] - Domain d1rzte1, region E:250-328 [Jmol] [rasmolscript] [script source] - Domain d1rzte2, region E:329-385 [Jmol] [rasmolscript] [script source] - Domain d1rzte3, region E:386-575 [Jmol] [rasmolscript] [script source] - Domain d1rzti1, region I:250-328 [Jmol] [rasmolscript] [script source] - Domain d1rzti2, region I:329-385 [Jmol] [rasmolscript] [script source] - Domain d1rzti3, region I:386-575 [Jmol] [rasmolscript] [script source] - Domain d1rztm1, region M:249-328 [Jmol] [rasmolscript] [script source] - Domain d1rztm2, region M:329-385 [Jmol] [rasmolscript] [script source] - Domain d1rztm3, region M:386-575 [Jmol] [rasmolscript] [script source] |
Sequence-derived information |
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OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science |