1S03 Transcription Rna date Dec 29, 2003
title The Structure Of A Ribosomal Protein S8spc Operon Mrna Comp
authors H.J.Merianos, J.Wang, P.B.Moore
compound source
Molecule: 47-Mer
Chain: A, B
Engineered: Yes
 Synthetic: Yes
Other_details: Rna Was Prepared By In Vitro Transciption, S From E. Coli Spc Operon;

Molecule: 30s Ribosomal Protein S8
Chain: H, G
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 32 2 1
R_factor 0.237 R_Free 0.273
crystal
cell
length a length b length c angle alpha angle beta angle gamma
61.220 61.220 332.520 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.70 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
H, G


Primary referenceThe structure of a ribosomal protein S8/spc operon mRNA complex., Merianos HJ, Wang J, Moore PB, RNA 2004 Jun;10(6):954-964. PMID:15146079
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (1s03.pdb1.gz) 40 Kb
  • Biological Unit Coordinates (1s03.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 1S03
  • CSU: Contacts of Structural Units for 1S03
  • Likely Quarternary Molecular Structure file(s) for 1S03
  • Structure Factors (175 Kb)
  • Retrieve 1S03 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S03 from S2C, [Save to disk]
  • Re-refined 1s03 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1S03 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1S03
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S03, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s03g_, region G [Jmol] [rasmolscript] [script source]
        - Domain d1s03h_, region H [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s03_G] [1s03_B] [1s03_H] [1s03_A] [1s03]
  • SWISS-PROT database: [P0A7W7]
  • Domain organization of [RS8_ECOLI] by SWISSPFAM
    • Other resources with information on 1S03
  • Community annotation for 1S03 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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