1S0T Dna date Jan 04, 2004
title Solution Structure Of A Dna Duplex Containing An Alpha-Anome Adenosine: Insights Into Substrate Recognition By Endonucle
authors J.M.Aramini, S.H.Cleaver, R.T.Pon, R.P.Cunningham, M.W.Germann
compound source
Molecule: 5'-D(Gptpcpcp(A3a)Pcpgpapcpg)-3'
Chain: A
Engineered: Yes
 Synthetic: Yes
Other_details: The Core Of The Sequence Corresponds To The Recognition Site Of E. Coli Endonuclease Iv;

Molecule: 5'-D(Cpgptpcpgptpgpgpapc)-3'
Chain: B
Engineered: Yes
Synthetic: Yes
methodSolution NMR
ligand A3A enzyme
Primary referenceSolution structure of a DNA duplex containing an alpha-anomeric adenosine: insights into substrate recognition by endonuclease IV., Aramini JM, Cleaver SH, Pon RT, Cunningham RP, Germann MW, J Mol Biol 2004 Apr 16;338(1):77-91. PMID:15050824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (14 Kb) [Save to disk]
  • Biological Unit Coordinates (1s0t.pdb1.gz) 11 Kb
  • LPC: Ligand-Protein Contacts for 1S0T
  • CSU: Contacts of Structural Units for 1S0T
  • Original NMR restraints for 1S0T from PDB
  • Retrieve 1S0T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S0T from S2C, [Save to disk]
    • View 1S0T in 3D
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    • Visual 3D analysis of 1S0T
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S0T, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s0t_B] [1s0t] [1s0t_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1S0T
  • Community annotation for 1S0T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
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