1S3H Transferase date Jan 13, 2004
title Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t
authors P.R.Hall, R.Zheng, L.Antony, M.Pusztai-Carey, P.R.Carey, V.C.Yee
compound source
Molecule: Transcarboxylase 5s Subunit
Chain: A
Ec: 2.1.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Propionibacterium Freudenreichii Subsp Shermanii;
Organism_taxid: 1752
Strain: Subsp. Shermanii
Gene: 5s
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Tuner(De3)Placi
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petblue-2
symmetry Space Group: C 2 2 21
R_factor 0.205 R_Free 0.250
crystal
cell
length a length b length c angle alpha angle beta angle gamma
96.258 146.320 78.718 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand CO, KCX enzyme Transferase E.C.2.1.3.1 BRENDA
related structures by homologous chain: 1RQE, 1U5J
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTranscarboxylase 5S structures: assembly and catalytic mechanism of a multienzyme complex subunit., Hall PR, Zheng R, Antony L, Pusztai-Carey M, Carey PR, Yee VC, EMBO J 2004 Aug 26;. PMID:15329673
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (78 Kb) [Save to disk]
  • Biological Unit Coordinates (1s3h.pdb1.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 1S3H
  • CSU: Contacts of Structural Units for 1S3H
  • Likely Quarternary Molecular Structure file(s) for 1S3H
  • Structure Factors (218 Kb)
  • Retrieve 1S3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1S3H from S2C, [Save to disk]
  • Re-refined 1s3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1S3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1S3H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1S3H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1s3ha1, region A:307-474 [Jmol] [rasmolscript] [script source]
        - Domain d1s3ha2, region A:4-306 [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1s3h_A] [1s3h]
  • SWISS-PROT database: [Q70AC7]
  • Domain organization of [5S_PROFR] by SWISSPFAM
  • Other resources with information on 1S3H
  • Community annotation for 1S3H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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